- MassLynx and applications
(Not an exhaustive, exclusive list)
Mass spectrometer tuning *.dbf (TDAT) or *.ipr (Ethernet)
Mass spectrometer acquisition *.mdb (TDAT) or *.exp (Ethernet)
Automatic Switching Function *.asf (TDAT)
ACQUITY Column Manager *.acm
ACQUITY Sample Manager (SM) *.w2200
ACQUITY FTN Sample Manager *.ftn
ACQUITY Solvent Manager (BSM) *.wvhp
ACQUITY Quaternary Sample Manager *.qsm
ACQUITY SM Flow Through Needle *.ftn
HPLC pump control
*.h11 for HP1100
*.gil for Gilson
*.szu for Shimadzu
*.w60 for Waters 600
*.wat for Waters 2695
*.w25 for Waters 1525 or 515
*.w27 for Waters 2700
*.w29 for Waters 2795
*.w60 for Waters 600 pump (old ML)
*.w96 for Waters 2796
*.j15 for Jasco 1500
*.jas for Jasco 900
*.bgm pump control for 600, 1525, 2525, 515, 2545
Inlet event logs *.log
Calibration files *.cal
ChroTool file *.cxl
Sample list files *.spl
Sample list format *.fmt
Raw mass spectral information *.raw
Raw data folders contain: *.inf *.dat *.idx *.txt
Project root *.pro
Text files used in lots of applications *.txt
TargetLynx analysis method *.mdb
(or QuanLynx method)
MetaboLynx method file *.mep - in root ML directory
MetaboLynx report file *.rpt - in root ML directory
NeoLynx / IonLynx Test File (browser report file) *.ntf = method file
NeoLynx / IonLynx Result Files *.nrf
NeoLynx / IonLynx Report Scheme *.nrs
NeoLynx V3.2 and V3.3 Rule files *.rle
OpenLynx batch file *.olb
OpenLynx parameters file *.olp
OpenLynx status file *.ols
OpenLynx report scheme files *.ors
OpenLynx Browser report file *.rpt
OpenLynx HPLC method parameters file *.lca
Shutdown method *.acl
BlackBox logs (AppSight Log) *.asl
BlackBox recording profile *.rpr
FractionLynx files *.flp
QuanOptimize method *.qlm
QuanLynx Browser results file *.qld
QuanLynx layout *.qlt
QuanLynx formatting quanlynx.~ql
Inlet CTC macro related file *.pma
Inlet CTC macro related file *.pme
Inlet CTC macro related file *.pmx
Inlet CTC related file *.pol
IQ Checker report file *.iqc
High Duty Cycle (HDC) lookup table *.lue
Created from existing data using Driftscope. Used by MassLynx method files to determine which ions to apply HDC to in acquisitions.
Driftscope rule file *.rul
Created from existing data using Driftscope to define a subset of ions (for example, multiply charged ions). The rule file is then used in a MassLynx mobility method to acquire only the defined subset of ions.
Protein sequence *.fas Open amino acid sequence file format. Used by BioLynx and Protein Lynx.
Protein sequence *.fasta Open amino acid sequence file format. Used by BioLynx and Protein Lynx.
Molecule structure *.mol Open format for defining molecular structures. Used by MetaboLynx to draw chemical structures.
Protein sequence file *.psq Used by BioLynx > Pepseq for sequencing DDA data.
Oligonucleotide sequence *.oli Used by BioLynx for sequencing oligonucleotides.
Nucleotide Sequence *.nuc Used by BioLynx for sequencing nucleotides.
Carbohydrate sequence *.cbt Used by BioLynx for sequencing oligosaccharides.
Protein probe *.prp Used by ProteinLynx (not PLGS).
Text files (in MS method editor) *.txt Text files are used in DDA and PID methods to define include and exclude lists, charge state dependent collision energy ramps, and collision energy profiles.
Multiple reaction monitoring MSMS method *.mrm Mrm files are used to define the list of transitions to be monitored by the MRM acquisition method.